Automatic generation of pseudoknotted RNAs taxonomy

BMC Bioinformatics

Table 10 Results of the evaluation framework applied to the three life domains (Archaea, Bacteria and Eukaryota) of 5S rRNA benchmark where average linkage was used in clustering

	Genus	PSMAlign	ASPRAlign	PskOrder	RAG-2D
Archaea
Rand index	0.631	1.0	0.480	0.631	0.677
Homogeneity	0.017	1.0	0.164	0.017	0.042
Completeness	0.051	1.0	0.130	0.051	0.075
Bacteria
Rand index	0.423	0.830	0.709	0.423	0.423
Homogeneity	0.031	0.700	0.455	0.031	0.309
Completeness	0.079	0.784	0.602	0.079	0.079
Eukaryota
Rand index	0.485	0.800	0.485	0.485	0.485
Homogeneity	0.092	0.576	0.092	0.092	0.092
Completeness	0.323	0.841	0.323	0.323	0.323

ISSN: 1471-2105