Automatic generation of pseudoknotted RNAs taxonomy

BMC Bioinformatics

Table 3 Results of the evaluation framework applied to the three life domains (Archaea, Bacteria and Eukaryota) of 16S rRNA benchmark where complete linkage was used in clustering

	Genus	PSMAlign	ASPRAlign	PskOrder	RAG-2D
Archaea
Rand index	0.565	0.721	0.746	0.601	0.547
Homogeneity	0.134	0.833	0.833	0.118	0.128
Completeness	0.198	0.541	0.559	0.230	0.100
Bacteria
Rand index	0.453	0.847	0.818	0.302	0.707
Homogeneity	0.146	0.811	0.684	0.074	0.253
Completeness	0.272	0.631	0.582	0.279	0.212
Eukaryota
Rand index	0.450	0.734	0.768	0.248	0.782
Homogeneity	0.122	0.455	0.474	0.074	0.302
Completeness	0.295	0.476	0.520	0.413	0.272

ISSN: 1471-2105