Automatic generation of pseudoknotted RNAs taxonomy

BMC Bioinformatics

Table 4 Results of the evaluation framework applied to the three life domains (Archaea, Bacteria and Eukaryota) of 16S rRNA benchmark where average linkage was used in clustering

	Genus	PSMAlign	ASPRAlign	PskOrder	RAG-2D
Archaea
Rand index	0.565	0.431	0.746	0.601	0.547
Homogeneity	0.134	0.180	0.833	0.118	0.128
Completeness	0.198	0.147	0.559	0.230	0.100
Bacteria
Rand index	0.453	0.759	0.823	0.302	0.704
Homogeneity	0.146	0.618	0.661	0.074	0.247
Completeness	0.272	0.713	0.613	0.279	0.210
Eukaryota
Rand index	0.450	0.688	0.729	0.248	0.761
Homogeneity	0.122	0.332	0.380	0.074	0.289
Completeness	0.295	0.499	0.483	0.413	0.277

ISSN: 1471-2105