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Table 5 Results of the evaluation framework applied to the three life domains (Archaea, Bacteria and Eukaryota) of 23S rRNA benchmark where single linkage was used in clustering

From: Automatic generation of pseudoknotted RNAs taxonomy

 

Genus

PSMAlign

ASPRAlign

PskOrder

RAG-2D

Archaea

Rand index

1.0

1.0

1.0

1.0

1.0

Homogeneity

1.0

1.0

1.0

1.0

1.0

Completeness

1.0

1.0

1.0

1.0

1.0

Bacteria

Rand index

0.458

0.403

0.403

0.470

0.584

Homogeneity

0.242

0.155

0.155

0.248

0.216

Completeness

0.500

0.320

0.320

0.510

0.230

Eukaryota

Rand index

0.776

0.829

0.843

0.695

0.800

Homogeneity

0.601

0.575

0.676

0.498

0.571

Completeness

0.551

0.604

0.726

0.548

0.655

  1. The highest score for each row is written in bold
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BMC Bioinformatics

ISSN: 1471-2105

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