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Table 7 Results of the evaluation framework applied to the three life domains (Archaea, Bacteria and Eukaryota) of 23S rRNA benchmark where average linkage was used in clustering

From: Automatic generation of pseudoknotted RNAs taxonomy

 

Genus

PSMAlign

ASPRAlign

PskOrder

RAG-2D

Archaea

Rand index

1.0

1.0

1.0

1.0

1.0

Homogeneity

1.0

1.0

1.0

1.0

1.0

Completeness

1.0

1.0

1.0

1.0

1.0

Bacteria

Rand index

0.487

0.633

0.830

0.473

0.591

Homogeneity

0.202

0.542

0.653

0.221

0.223

Completeness

0.307

0.718

0.742

0.387

0.220

Eukaryota

Rand index

0.776

0.857

0.843

0.695

0.810

Homogeneity

0.601

0.650

0.676

0.445

0.536

Completeness

0.551

0.683

0.726

0.467

0.559

  1. The highest score for each row is written in bold
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BMC Bioinformatics

ISSN: 1471-2105

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