Automatic generation of pseudoknotted RNAs taxonomy

BMC Bioinformatics

Table 8 Results of the evaluation framework applied to the three life domains (Archaea, Bacteria and Eukaryota) of 5S rRNA benchmark where single linkage was used in clustering

	Genus	PSMAlign	ASPRAlign	PskOrder	RAG-2D
Archaea
Rand index	0.631	1.0	0.48	0.631	0.677
Homogeneity	0.017	1.0	0.164	0.017	0.042
Completeness	0.052	1.0	0.130	0.052	0.075
Bacteria
Rand index	0.423	0.747	0.553	0.423	0.423
Homogeneity	0.031	0.557	0.181	0.031	0.031
Completeness	0.079	0.720	0.463	0.079	0.079
Eukaryota
Rand index	0.486	0.569	0.486	0.486	0.486
Homogeneity	0.093	0.269	0.093	0.093	0.093
Completeness	0.323	0.725	0.323	0.323	0.323

ISSN: 1471-2105