TEMPROT: protein function annotation using transformers embeddings and homology search

BMC Bioinformatics

Table 3 Ablation study of different configurations of our method on the three ontologies

Method	\(F_{\max }\)
Method	BP	CC	MF
TEMPROT+	0.581	0.692	0.662
TEMPROT	0.499	0.689	0.643
TEMPROT w/o augmentation	0.493	0.687	0.639
TEMPROT w/o fine-tuning	0.493	0.681	0.618
TEMPROT w/o augmentation and w/o fine-tuning	0.490	0.681	0.620
TEMPROT w/o meta-classifier	0.477	0.677	0.592

ISSN: 1471-2105