Table 4 Average prediction time in seconds for each protein of the test set on BP, CC and MF ontologies

Naive

0.001

0.002

0.002

DIAMOND

0.005

0.008

0.007

DeepGOPlusCNN

0.013

0.022

0.025

DeepGO

0.019

0.025

0.026

DeepGOPlus

0.023

0.030

0.032

TALE+Transformers

0.035

0.047

0.062

TALE+

0.040

0.055

0.069

ATGO

0.304

0.508

0.434

TEMPROT

0.617

0.643

0.627

BLASTp

0.666

0.946

0.595

CAFA-BLASTp

0.666

0.946

0.595

ATGO+

0.971

1.455

1.029

TEMPROT+

1.283

1.589

1.222