Table 5 Comparison between de novo creation in SBMLsqueezer 2 and 2DK in SBMLKinetics
From: SBMLKinetics: a tool for annotation-independent classification of reaction kinetics for SBML models
De novo creation | 2DK | Specific descriptions if applicable |
|---|---|---|
Non-enzyme reactions | K type | ZERO, UNDR, UNMO, BIDR, BIMO |
Uni–uni enzyme reactions | K type | MM, MMCAT, HILL |
Bi–uni enzyme reactions | K type | FR |
Bi–bi enzyme reactions | K type | FR |
Arbitrary enzyme reactions | K type | FR |
Modulated reactions | K type | UNMO, BIMO, MM, MMCAT, HILL |
Gene-regulatory processes | R type or K type | RÂ =Â 0 or Hill/FR |
Integer stoichiometry reactions | R type | Â |
Zeroth reactant order reactions | R type | RÂ =Â 0 |
Zeroth product order reactions | R type | PÂ =Â 0 |
Irreversible reactions | – |  |
Reversible reactions | – |  |