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Table 1  SARS-CoV2 papain-like protease substrates

From: Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy

UniProt ID

Name

PDB entry

Reference

SM

TM

Econtact

Zcom

ISG15

Ubiquitin-like protein

6XAA

Klemm [49]

1.11

0.96

− 15.07

38.3

ANKUB

Ankyrin repeat

5BZ0

[15]

1.10

0.87

− 23.39

27.3

UBB

Ubiquitin B

6XAA

Klemm [49]

1.09

0.93

− 16.52

66.9

ELOB

Elongin-B

4WUR

[17]

1.06

0.85

− 20.81

31.1

MIDN

Midnolin

5W8T

[7]

1.03

0.85

− 18.02

45.6

TMUB1/B2

Transmembrane

5TL7

[7]

1.02

0.82

− 20.45

41.4

SUMO3

Ubiquitin modifier 3

5W8T

[7]

1.02

0.83

− 18.78

43.1

UBL7

Ubiquitin-like protein 7

5WFI

[25]

1.02

0.80

− 21.48

36.1

NF2IP

NFATC2-interacting protein

5BZ0

[15]

1.02

0.78

− 23.89

24.5

UBC

Polyubiquitin C

6XA9

Klemm [49]

1.02

0.87

− 14.99

162.9

RD23A/B

UV repair protein Rad23

5WFI

[25]

1.01

0.77

− 24.14

45.5

IQUB

Ubiquitin-like domain

5WFI

[25]

0.99

0.77

− 21.67

35.2

UBD

Ubiquitin D

5W8T

[7]

0.98

0.84

− 13.66

42.6

  1. Top scoring Human protein complex models for SARS-CoV2 papain-like protease of Nsp3