From: Evaluating imputation methods for single-cell RNA-seq data
Dataset | raw\(^{*}\) | SIMLR | ZINB-WaVE | scImpute | DrImpute | SAVER | MAGIC | NE | scVI | DCA | scScope | SAUCIE |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ILC | 0.831 | 0.039 | 0.014 | 0.693 | 0.496 | 0.841 | 0.027 | 0.839 | 0.013 | 0.264 | 0.024 | 0.019 |
HCC | 0.656 | 0.203 | 0.030 | 0.320 | 0.286 | 0.670 | 0.084 | 0.382 | 0.317 | 0.289 | 0.255 | 0.023 |
CRC | 0.380 | 0.243 | 0.153 | 0.294 | 0.384 | 0.483 | 0.150 | 0.388 | 0.301 | 0.346 | 0.301 | 0.043 |
NSCLC | 0.162 | 0.164 | 0.010 | 0.172 | 0.072 | 0.260 | 0.050 | 0.350 | - | 0.190 | 0.191 | 0.021 |
PBMC | 0.821 | 0.814 | 0.760 | 0.780 | 0.802 | 0.830 | 0.703 | 0.831 | 0.853 | 0.833 | 0.891 | 0.211 |
BCC | 0.603 | 0.475 | 0.460 | – | – | 0.503 | 0.113 | 0.525 | 0.556 | 0.546 | 0.398 | 0.090 |
ITC | 0.599 | 0.554 | 0.585 | 0.433 | 0.545 | 0.556 | 0.172 | 0.493 | 0.466 | 0.408 | 0.228 | 0.087 |
DC.human | 0.557 | 0.523 | 0.560 | 0.542 | 0.600 | 0.546 | 0.379 | 0.610 | 0.635 | 0.615 | 0.554 | 0.056 |
DC.mouse | 0.685 | 0.471 | 0.698 | 0.509 | 0.690 | 0.690 | 0.328 | 0.600 | 0.666 | 0.618 | 0.437 | 0.171 |
Melanoma.1 | 0.557 | 0.498 | 0.564 | 0.466 | 0.625 | 0.616 | 0.208 | 0.507 | 0.488 | 0.536 | 0.544 | 0.064 |
Melanoma.2 | 0.526 | 0.422 | – | – | 0.516 | 0.412 | 0.342 | 0.440 | 0.517 | - | 0.054 | 0.101 |
BRCA | 0.328 | 0.239 | – | – | 0.174 | 0.444 | 0.302 | 0.277 | 0.447 | - | 0.054 | 0.189 |
Sim1 | 0.780 | 0.988 | 0.543 | 0.982 | 1.000 | 0.902 | 0.594 | 0.973 | 0.147 | 0.925 | 0.918 | 0.324 |
Sim2 | 0.008 | 0.928 | 0.003 | 0.198 | 0.996 | 0.604 | 0.517 | 0.849 | 0.018 | 0.557 | 0.878 | 0.323 |
Sim3 | 0.004 | 0.422 | 0.002 | 0.074 | 0.920 | 0.010 | 0.353 | 0.591 | 0.032 | 0.214 | 0.872 | 0.166 |
Sim4 | 0.007 | 0.138 | 0.002 | 0.007 | 0.130 | 0.005 | 0.034 | 0.104 | 0.006 | 0.004 | 0.601 | 0.025 |