Fig. 3
From: OGRE: calculate, visualize, and analyze overlap between genomic input regions and public annotations
Application of OGRE for a list of genes following a differential gene expression experiment and display of user interface SHREC. A OGRE’s graphical user interface with a histogram chart displaying a distribution of EGR4 binding sites with median as dashed black line. Y-axis: EGR4 binding site frequency, x-axis: Number of EGR4 binding sites per gene. B Gene checkbox listing regulatory element presence; promoter, CGI, and TFBS in a set of input genes. C Genomic view window of FAM228B with strand information and promoter, CGI and TFBS without strand information