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Fig. 1 | BMC Bioinformatics

Fig. 1

From: VariantscanR: an R-package as a clinical tool for variant filtering of known phenotype-associated variants in domestic animals

Fig. 1

Overview of the variantscanR workflow. Files are shown as file icons, functions are written in italic. The functions required for the two-step workflow are depicted in yellow. The three input files needed for the two-step workflow are depicted in green. These are the variant call format (VCF) file, the variants of interest (VOI) file and an annotation BED file. The grey functions are additional, optional functions that make the package as user-friendly as possible. Next to these additional functions, two supplementary functions were created that are out of the variant-filtering scope of the workflow: one allows the calculation of the genetic diversity of every individual sample in a multi-sample VCF file, while the second function retains all the remaining variants present in the sample for the genes of interest

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BMC Bioinformatics

ISSN: 1471-2105

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