Table 1 .
From: BioLegato: a programmable, object-oriented graphic user interface
Application | Data type | Method examples |
|---|---|---|
birch | NA | Launches other BioLegato applications |
birchadmin | NA | BIRCH administration tasks |
bldna | Nucleic acid sequences | Primer design; restriction search; Pairwise similarity; multiple alignment |
blprotein | Protein sequences | Aa comp; pairwise similarity; Multiple alignment |
blnalign | Aligned nucleotide sequences | Sequence logos; phylogeny |
blpalign | Aligned amino acid sequences | Sequence logos; phylogeny |
blnfetch | Nucleotide sequence metadata | Retrieves nucleic acid sequences from NCBI |
blpfetch | Protein sequence metadata | Retrieves protein sequences from NCBI |
blncbi | Query terms | Returns lists of sequences from NCBI |
bltree | Phylogenetic trees | consensus trees; draw trees |
blmarker | Molecular marker data | Phylogeny |
blreads | Sequencing read files | Preprocessing of reads and assembly of genomes and transcriptomes |
bltable | Generic tabular data | Basic spreadsheet operations |
blgeneric | NA | Demonstration of BioLegato as an abstract class |