Fig. 7
From: Haplotype based testing for a better understanding of the selective architecture
Results for different total numbers of haplotypes. In the left panel, ROC curves are plotted for the original haplotype, HapSNP, and SNP based test under various choices of \(N_{{\text {Hap}}}\). HapSNP refers to the method of using the SNP based test to reduce the haplotype number prior to haplotype based testing outlined in "Testing when many haplotypes are present" section. Here, results are shown for 10, 20, and 40 starting haplotypes. The number of selected haplotypes is set to \(h_{{\text {Sel}}} = N_{{\text {Hap}}}/2\). All other parameter values can be found in Table 2. In the right panel, the AUC of the ROC curves is plotted independently of the starting haplotype number. The other parameter values are identical to those used in the left panel