Table 1 Structure of (true) haplotype frequency matrix with k sequenced time points for some replicate population r. The estimated frequency of haplotype j at generation t for replicate r is denoted by \(\hat{f}_{j,t}^{(r)}\)
From: Haplotype based testing for a better understanding of the selective architecture
Haplotype | Generation | ||||
|---|---|---|---|---|---|
0 | \(t_1\) | \(\ldots\) | \(t_{k-2}\) | T | |
1 | \(f_{1,0}^{(r)}\) | \(f_{1,t_1}^{(r)}\) | \(\ldots\) | \(f_{1,t_{k-2}}^{(r)}\) | \(f_{1,T}^{(r)}\) |
2 | \(f_{2,0}^{(r)}\) | \(f_{2,t_1}^{(r)}\) | \(\ldots\) | \(f_{2,t_{k-2}}^{(r)}\) | \(f_{2,T}^{(r)}\) |
\(\vdots\) | \(\vdots\) | \(\vdots\) | Â | \(\vdots\) | \(\vdots\) |
\(N_{{\text {Hap}}}\) | \(f_{N_{{\text {Hap}}},0}^{(r)}\) | \(f_{N_{{\text {Hap}}},t_1}^{(r)}\) | \(\ldots\) | \(f_{N_{{\text {Hap}}},t_{k-2}}^{(r)}\) | \(f_{N_{{\text {Hap}}},T}^{(r)}\) |
\(\sum ^{N_{{\text {Hap}}}}_{j=1}f_{j,t}^{(r)}\) | 1 | 1 | \(\ldots\) | 1 | 1 |