Table 2 Default parameter values for "Influence of the model parameters, Diploid populations, Testing for the number of selected haplotypes, Pairwise test, Experimental designs involving many haplotypes" sections and Additional file 1: Section S.6. Unless otherwise mentioned, Figures within these sections use parameters from this table when simulating results
From: Haplotype based testing for a better understanding of the selective architecture
Parameters | Â | Â |
|---|---|---|
\(N_{SNP}\) | 500 | Number of SNPs per haplotype |
\(N_{{\text {Hap}}}\) | 10 | Number of haplotypes |
k | 7 | Total number of sequenced time points |
\(\Delta t\) | 10 | Number of generations between adjacent time points |
\(N_e\) | 1000 | Effective population size |
\(h_{{\text {Sel}}}\) | 1 | Number of selected haplotypes |
s | 0.03 | Selective strength |
R | 3 | Number of replicates |
\(\alpha\) | 0.05 | Significance level |
\(n_{{\text {sim}}}\) | 10,000 | Number of simulations per parameter set |