ggcoverage: an R package to visualize and annotate genome coverage for various NGS data

BMC Bioinformatics

Table 2 ggcoverage layers

Layer	Type	Description
geom_coverage	Coverage	Create genome coverage plot
geom_base	Annotation	Add base, base frequency and amino acid annotations
geom_cnv	Annotation	Add CNV annotation
geom_gc	Annotation	Add GC content annotation
geom_gene	Annotation	Add gene annotation
geom_transcript	Annotation	Add gene’s transcripts annotation
geom_peak	Annotation	Add peak annotation
geom_ideogram	Annotation	Add chromosome ideogram annotation
geom_tad	Annotation	Add contact map annotation
geom_link	Annotation	Add link annotation
geom_protein	Coverage	Create protein coverage plot
geom_feature	Annotation	Add protein/genome feature annotation

ISSN: 1471-2105