Table 1 Diseases and genes associated with Hashimoto’s thyroiditis

Myasthenia gravis

PTPN22, CTLA4

Lin et al. [30], Lopomo and Berrih-Aknin [31]

Vitiligo

TYR, TG, TSHR, AIS1, forkhead transcription factor D3 (FOXD3), PTPN22 1858T (rs2476601), FOXP3 mutations TG/SLA

Cojocaru et al. [32], Said Fernandez et al. [33], Czajkowski [34]

Rheumatoid arthritis

PTPN22 (rs2476601), HLA-DR, B1-Arg74, CTLA4, PTPN22, FCRL3, IL2RA, BTG1, FCRL3

Yamamoto et al. [35], Lazurova et al. [36]

Type 1 diabetes

HLA-DRB1-03:01, HLA-DRB1-03:02, HLA-DRB1-04:01, HLA-DQA1-03:01, HLA-DQA1-05:01, HLA-DQB1-02:01, HLA-DQB1-03:01, HLA-DQB1-03:02. HLA-DRB1-03:01-DQA1-05:01-DQB1-02:01, HLA-DRB1-04:01-DQA1-03:01-DQB1-03:01, HLA-DRB1-04:01-DQA1-03:01-DQB1-03:02, CTLA4 (c.+6230GA, rs3087243), CTLA4 (c.49AG, rs231775), PTPN22 (c.+1858 CT, rs2476601), PTPN22 (rs2476601), IL2Ra (c.AG rs10795791),VDR, Bsm I rs1544410; Apa I rs7975232, Taq I rs731236, tumor necrosis factor (TNF, c.-863GA, rs1800630), C-type lectin domain containing 16 (CLEC16A) (rs12708716), erb-B2 receptor tyrosine kinase 3 (ERBB3) gene (rs2292399), the interferon induced with helicase C domain 1 (IFIH1) gene (rs1990760), CTLA4, PTPN22, IL2RA, CLEA16A, ERBB3, CCR5, CD247, VDR, NAA25, STAT4, INS, CAPSL, CD226 and IFIH1

Frommer and Kahaly [37], Baldini et al. [38]

Lupus

TPN22 (rs2476601)

Criswell et al. [39]

Graves’ disease

CTLA-4, PTPN22, HLA-DR3, TSHR, TG, HLA-DR\(\beta\)1, FOXP3, CD40, IL2RA

Tomer [40], Davies et al. [41]

Pernicious anemia

HLA-B8, DR3, DR5

Zulfiqar and Andres [42]

Sjogren’s syndrome

HLA-DR3 (DRB1:03:01)

Manuel et al. [43]

Celiac disease

HLA-DQ2 and HLA-DQ8 haplotypes, CTLA-4, CCR5

Mikosch et al. [44], de Carvalho and Fighera [45]

Hashimoto’s thyroids

CD25, CD40, FOXP3, CTLA4, PTPN22, thyroid stimulating hormone receptor, thyroglobulin, HLA-DR3, DRB1*04-DQB1*0301, HLA-DR B1-Arg74, CTLA4 gene +49A/G and CT 60, FoxP3, FoxP’s 2383CC polimorfizm, FOXE1, VAV3, CAPZB, PDE8B, TRIP2, LPP, FAM76B, RNASET2, CCR5, BACH2, ZFAT, SLC26A4, SESN3, DR5, DQ7 (HLA DQB1*0301, HLA DQB1*0304), DQw7, DRB1*04, DRB4*0101, HLA-A2, DRw53, VDR, TGF-beta, IFN-gamma, CYP27B1, IP6K3

Mikosch et al. [44], Frommer and Kahaly [37], Zaletel and Gaberscek [46], Kherrour et al. [47]