Galba: genome annotation with miniprot and AUGUSTUS

BMC Bioinformatics

Table 5 Summary of genomes and annotations used for accuracy evaluation

Species	Size (Mbp)	#Genes	#Transcripts	Mono:Mult	#ReliableTx
Arabidopsis thaliana	119	27,445	48,149	0.30	17,800^b
Bombus terrestris	249	10,581	22,091	0.06	7481^b
Caenorhabditis elegans	100	20,172	33,624	0.0	15,819^b
Dano rerio	1345	25,611	42,934	0.08	19,978^a
Drosophila melanogaster	138	13,930	30,561	0.25	10,321^b
Gallus gallus	1050	17,279	38,534	0.09	12,733^a
Medicago truncatula	420	44,464	44,464	0.54	20,059^b
Mus musculus	2723	22,405	58,318	0.20	20,708^a
Parasteatoda tepdariorum	1445	18,602	27,516	0.19	7926^b
Populus trichocarpa	389	34,488	52,085	0.35	22,203^b
Rhodnius prolixus	706%MCEPASTEBIN%	15,061	15,075	0.19	3340^b
Solanum lycopersicum	773	33,562	33,562	0.32	13,803^b
Tetraodon nigroviridis	359	19,589	23,105	0.04	2112^b
Xenopus tropicalis	1449	21,821	45,081	0.11	14,683^b

Data extracted from Table 4 in [7] and computed from raw data of [7, 20]. Note that #ReliableTx (for reliable transcripts) has two different meanings: ^aTranscripts that are annotated identically by at least two reference annotation providers, ^bTranscripts that have support in all introns by RNA-Seq evidence

ISSN: 1471-2105