Table 3 Additional space requirements to store the variant type for each tool
From: Critical assessment of on-premise approaches to scalable genome analysis
Additional space requirement | Rating | |
|---|---|---|
BCFtools | None | Low |
SnpSift | Creates a new VCF file with INDEL boolean flag | High |
GEMINI | None, pre-annotated during initial load | Low |
Hail | Creates a new column of boolean type in Matrix Table | Med |
OpenCGA | None, pre-annotated during initial load | Low |