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Table 3 Time in seconds for complete serial execution of PAM (initialization with BUILD + optimization)

From: Scellpam: an R package/C++ library to perform parallel partitioning around medoids on scRNAseq data sets

Sample

Package

Size

Cluster

Fastkmedoids

ClusterR

Scellpam

8879

14.2

13.0

290.1

12.16

17,758

60.7

57.0

977.0

52.0

35,516

258.0

249.2

4266.8

271.8

71,032

NA

SF

19468.7

1764.0

  1. NA: package indicates with a message that no more than 65,535 individuals are allowed
  2. SF: Segmentation fault
  3. Note: Cluster package used with parameter pamonce=5
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BMC Bioinformatics

ISSN: 1471-2105

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