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Fig. 2 | BMC Bioinformatics

Fig. 2

From: Bulk brain tissue cell-type deconvolution with bias correction for single-nuclei RNA sequencing data using DeTREM

Fig. 2

Deconvolution accuracy assessed for four scenarios of simulated data. Heatmap color shows the concordance correlation coefficient (CCC) between true and estimated cell-type percentages. Each column shows the deconvolution method with versions of MuSiC, SCDC, and CIBERSORTx separated from DeTREM by a dashed line. Rows delineate the seven cell-types assayed as indicated according to the color coding in the key. Results for the method with the highest CCC in each condition are bolded. One set of estimates with zero variance is marked as NA. Box plots indicate the aggregated CCC values for each method

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BMC Bioinformatics

ISSN: 1471-2105

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