Fig. 1

Overview of HoCoRT performance on simulated gut microbiome datasets. Box plots of HoCoRT runtime in seconds (top) and classification accuracy (bottom) using several different classification modules and parameters on Illumina HiSeq (yellow, left), MiSeq (cyan, middle) and Nanopore data (red, right). Table 1 contains additional results, including those for BioBloom (on Nanopore data), BBMap, BBSplit, Bowtie2 with the ‘un-conc’ option, and BWA-MEM2, which were excluded from this figure due to outliers