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Fig. 9 | BMC Bioinformatics

Fig. 9

From: SeqPredNN: a neural network that generates protein sequences that fold into specified tertiary structures

Fig. 9

Difference between predicted structures and the native crystal structure. Cα–Cα RMSD of AlphaFold and RoseTTAFold predicted protein structures aligned to the original PDB crystallographic structure. The predicted structures for the native sequences (PDB) serve as a control to compare the SeqPredNN, ProDCoNN and ProteinSolver sequences of the seven proteins. Both the AlphaFold and RoseTTAFold predictions for the ProdCoNN sequence of 1YSA lie outside the plot area with RMSD values of 18.9 and 19.8 Å, respectively. The RoseTTAFold could not predict the structure of the ProteinSolver sequence for 1YSA

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BMC Bioinformatics

ISSN: 1471-2105

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