Table 2 Characteristics of the assemblies made by Mabs-hifiasm and Hifiasm
From: Mabs, a suite of tools for gene-informed genome assembly
Species | Method of assembly | BUSCO results | N50 (bp) | Sum of contigs’ lengths (bp) | AG | Assembly timea | Peak RAM usagea |
|---|---|---|---|---|---|---|---|
Trifolium pratense | Mabs-hifiasm | C:98.0%[S:92.9%,D:5.1%], F:1.3%,M:0.7% | 20,490,459 | 460,521,547 | 1385 | 9h 50m | 62 GB |
Hifiasm | C:98.1%[S:92.6%,D:5.5%], F:1.3%,M:0.6% | 18,371,892 | 472,503,778 | 1380 | 2h 55m | 54 GB | |
Mabs-hifiasm + Purge_dups | C:90.7%[S:86.3%,D:4.4%], F:1.1%,M:8.2% | 21,823,263 | 332,714,522 | 1279 | 9h 50m + 1h 41m | 62 GB | |
Hifiasm + Purge_dups | C:90.6%[S:86.2%,D:4.4%], F:1.4%,M:8.0% | 21,823,263 | 317,658,493 | 1255 | 2h 55m + 1h 45m | 54 GB | |
Manihot esculenta | Mabs-hifiasm | C:98.5%[S:91.0%,D:7.5%], F:0.7%,M:0.8% | 34,338,427 | 747,732,950 | 1590 | 10h 51m | 102 GB |
Hifiasm | C:98.5%[S:90.0%,D:8.5%], F:0.7%,M:0.8% | 29,220,819 | 774,580,850 | 1579 | 4h 18m | 94 GB | |
Mabs-hifiasm + Purge_dups | C:46.0%[S:42.8%,D:3.2%], F:1.0%,M:53.0% | 33,797,513 | 208,140,594 | 658 | 10h 51m + 5h 7m | 102 GB | |
Hifiasm + Purge_dups | C:80.5%[S:74.8%,D:5.7%], F:0.8%,M:18.7% | 31,723,266 | 455,473,424 | 1250 | 4h 18m + 5h 51m | 94 GB | |
Heracleum sosnowskyi | Mabs-hifiasm | C:98.0%[S:89.6%,D:8.4%], F:0.4%,M:1.6% | 22,232,970 | 1,631,972,638 | 1392 | 13h 45m | 57 GB |
Hifiasm | C:98.3%[S:80.9%,D:17.4%], F:0.5%,M:1.2% | 13,468,048 | 1,814,805,347 | 1307 | 4h 8m | 74 GB | |
Mabs-hifiasm + Purge_dups | C:11.4%[S:10.8%,D:0.6%], F:0.9%,M:87.7% | 55,489,431 | 178,451,278 | 128 | 13h 45m + 12h 33m | 57 GB | |
Hifiasm + Purge_dups | C:35.7%[S:34.0%,D:1.7%], F:0.8%,M:63.5% | 12,038,317 | 460,607,932 | 453 | 4h 8m + 16h 32m | 74 GB |