Table 3 Characteristics of the assemblies made by Mabs-flye and Flye
From: Mabs, a suite of tools for gene-informed genome assembly
Species | Method of assembly | BUSCO results | N50 (bp) | Sum of contigs’ lengths (bp) | AG | Assembly timea | Peak RAM usagea |
|---|---|---|---|---|---|---|---|
Myripristis murdjan | Mabs-flye | C:97.2%[S:95.7%,D:1.5%], F:1.1%,M:1.7% | 1,738,191 | 849,324,108 | 2454 | 53h 14m | 18 GB |
Flye | C:97.9%[S:94.6%,D:3.3%], F:1.0%,M:1.1% | 1,831,223 | 913,966,709 | 2437 | 20h 15m | 25 GB | |
Mabs-flye + Purge_dups | C:97.2%[S:96.1%,D:1.1%], F:1.1%,M:1.7% | 1,883,475 | 812,749,847 | 2457 | 53h 14m + 24m | 18 GB | |
Flye + Purge_dups | C:97.8%[S:96.7%,D:1.1%], F:1.0%,M:1.2% | 2,177,694 | 834,985,181 | 2483 | 20h 15m + 20m | 25 GB | |
Adineta vaga | Mabs-flye | C:66.3%[S:57.0%,D:9.3%], F:10.4%,M:23.3% | 2,333,984 | 112,876,648 | 163 | 9h 50m | 32 GB |
Flye | C:67.0%[S:57.5%,D:9.5%], F:9.9%,M:23.1% | 1,636,027 | 116,202,497 | 161 | 2h 43m | 36 GB | |
Mabs-flye + Purge_dups | C:66.3%[S:57.3%,D:9.0%], F:10.4%,M:23.3% | 2,698,890 | 106,057,374 | 164 | 9h 50m + 6m | 32 GB | |
Flye + Purge_dups | C:66.6%[S:57.3%,D:9.3%], F:9.9%,M:23.5% | 2,339,515 | 105,961,627 | 162 | 2h 43m + 5m | 36 GB | |
Mytilus coruscus | Mabs-flye | C:85.0%[S:78.4%,D:6.6%], F:4.2%,M:10.8% | 308,470 | 2,165,590,554 | 2040 | 114h 46m | 210 GB |
Flye | C:83.7%[S:66.6%,D:17.1%], F:4.4%,M:11.9% | 280,259 | 2,333,181,150 | 1726 | 70h 10m | 216 GB | |
Mabs-flye + Purge_dups | C:84.3%[S:82.0%,D:2.3%], F:4.2%,M:11.5% | 343,029 | 1,951,757,051 | 2144 | 114h 46m + 1h 55m | 210 GB | |
Flye + Purge_dups | C:82.4%[S:79.8%,D:2.6%], F:4.5%,M:13.1% | 320,773 | 1,962,315,961 | 2107 | 70h 10m + 1h 49m | 216 GB |