Reference-based genome compression using the longest matched substrings with parallelization consideration

BMC Bioinformatics

Table 2 Test data

hg17	ftp://hgdownload.soe.ucsc.edu/goldenPath/hg17/chromosomes/
hg18	ftp://hgdownload.soe.ucsc.edu/goldenPath/hg18/chromosomes/
hg19	ftp://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/
hg38	ftp://hgdownload.soe.ucsc.edu/goldenPath/hg38/chromosomes/
KO131	ftp://ftp.kobic.re.kr/pub/KOBIC-KoreanGenome/KOREF_20090131/fasta/
KO224	ftp://ftp.kobic.re.kr/pub/KOBIC-KoreanGenome/KOREF_20090224/fasta/
HuRef	https://www.ncbi.nlm.nih.gov/nuccore Accession: CM000462-CM000485
YH	ftp://climb.genomics.cn/pub/10.5524/100001_101000/100015/fa/

ISSN: 1471-2105