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Table 3 Running time of different thread numbers

From: Reference-based genome compression using the longest matched substrings with parallelization consideration

Time (s)

Number of threads

30

20

10

1

KO131-KO224 (chr1.fa)

Build LCP

6.3

6.43

10.48

82.44

Filter SA&LCP

1.86

2.25

4.05

31.38

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BMC Bioinformatics

ISSN: 1471-2105

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