Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts

BMC Bioinformatics

Table 1 Properties of the GEMs studied in this paper

Organism	Origin	Reactions	Reversible reactions	Metabolites	Reactions drawing from protein pool
Metschnikowia pulcherrima	CarveFungi	2049	610	1633	1310
Lachancea thermotolerans	CarveFungi	2049	618	1647	1319
Torulaspora delbrueckii	CarveFungi	1876	559	1510	1163
Kluyveromyces lactis	CarveFungi	2131	621	1774	1401
Hanseniaspora osmophila	CarveFungi	1556	520	1218	902
Saccharomyces cerevisiae	iND750	1266	436	1059	0
Kluyveromyces lactis	iOD907	2180	894	2338	0
Lachancea thermotolerans	iBM3063	3063	1200	2741	0

sMOMENT versions of the models have more reactions than the listed numbers, as autoPACMEN adds auxiliary reactions and splits reactions drawing from the protein pool into separate forward and backward reactions. The models iND750, iOD907 and iBM3063 were taken from external sources [41,42,43] and did not have any corresponding enzyme constrained model

ISSN: 1471-2105