Fig. 3
From: cgMSI: pathogen detection within species from nanopore metagenomic sequencing data
The sensitivity of cgMSI to identify candidate strains using synthetic mNGS datasets. cgMSI identified candidate strains at different coverage ratios ranging from 0.1× to 5×, four different background strains (KA: Klebsiella aerogenes, KM: Klebsiella michiganensis, KQ: Klebsiella quasipneumoniae, KV: Klebsiella variicola) and two ratios of target strain to background strain (1:1 and 1:5). Top 5 to Top 40 indicate different numbers of candidate strains identified by cgMSI in the filtration operation. Error bar indicates 95% CI. When the set of candidate strains contains the target strain in a sample, we consider the filtrating operation as correct