From: Pan-genome de Bruijn graph using the bidirectional FM-index
Maximum edit distance | A4 performance [reads/s] | Nexus performance [reads/s] | ||
---|---|---|---|---|
APM runtime [s] | Node path finding runtime [s] | Post-processing runtime [s] | ||
K = 0 | 2 793 ± 278 |  | 13 324 ± 880 |  |
 | 2.60 (34%) | 2.03 (27%) | 2.93 (39%) | |
K = 1 | Not supported |  | 3 274 ± 128 |  |
 | 11.31 (37%) | 3.80 (12%) | 15.52 (51%) | |
K = 2 | Not supported |  | 1 145 ± 31 |  |
 | 32.97 (38%) | 9.36 (11%) | 45.12 (51%) | |
K = 3 | Not supported |  | 472 ± 13 |  |
 | 87.89 (41%) | 23.17 (11%) | 101.08 (48%) | |
K = 4 | Not supported |  | 199 ± 4 |  |
 | 253.23 (51%) | 52.27 (10%) | 196.15 (39%) |