From: AptaTrans: a deep neural network for predicting aptamer-protein interaction using pretrained encoders
Model Setup
ROC-AUC
ACC
MCC
F1
AptaTrans
0.899
0.857
0.639
0.733
w/ pretrained encoder for protein
0.905
0.874
0.671
0.756
w/ pretrained encoder for aptamer
0.909
0.860
0.650
0.741
w/ pretrained encoders for all
0.921
0.876
0.679
0.761