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Fig. 3 | BMC Bioinformatics

Fig. 3

From: Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

Fig. 3

Assembly performances for basecallers: A The genome coverage ratios, computed as the ratio between the total number of aligned bases in the contigs and the reference length. B The GC content plot, showing the distribution of GC content in the contigs. C Cumulative length plot reflecting the length growth of the aligned contigs against the reference genome. D The shortest aligned contig for which longer and equal length contigs cover at least \(50\%\) of the assembly, i.e., NGA50 plot. E The misassemblies where the contig has a stretched aligned position on the reference genome longer than 1k bases. F The average number of mismatches per 100k aligned bases. (The detailed description of the terminologies used in the plots can be found in the QUAST manual [40])

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BMC Bioinformatics

ISSN: 1471-2105

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