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Table 2 Testing performances on data batch 1.B

From: Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

Basecaller

Identity

Insertion

Deletions

Substitution

Read length

Entry counts

Bases (\(10^9\))

Lokatt

0.912/0.926

0.018/0.016

0.046/0.035

0.024/0.020

4852/2961

523191

2.432

Bonito Local

0.899/0.913

0.020/0.018

0.052/0.040

0.030/0.026

4770/2917

521186

2.362

Bonito Sup

0.937/0.955

0.012/0.009

0.031/0.018

0.020/0.015

4799/2916

540834

2.513

  1. *First five entries are listed as ‘mean/median’
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BMC Bioinformatics

ISSN: 1471-2105

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