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Table 3 Testing performances on data batch 2.A

From: Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

Basecaller

Identity

Insertion

Deletions

Substitution

Read length

Entry counts

Bases (\(10^9\))

Lokatt

0.903/0.933

0.016/0.013

0.051/0.033

0.029/0.020

5600/3398

1519444

8.132

Bonito Local

0.903/0.927

0.016/0.014

0.050/0.033

0.030/0.024

5392/3063

1467918

7.556

Bonito Sup

0.929/0.966

0.013/0.008

0.033/0.013

0.024/0.013

5588/3304

1579899

8.522

Guppy 5.0

0.907/0.936

0.019/0.015

0.042/0.027

0.031/0.021

5637/3391

1522808

8.153

  1. *First five entries are listed as ‘mean/median’
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BMC Bioinformatics

ISSN: 1471-2105

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