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Table 4 Testing performances on data batch 2.B

From: Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

Basecaller

Identity

Insertion

Deletions

Substitution

Read length

Entry counts

Bases (\(10^9\))

Lokatt

0.904/0.933

0.016/0.013

0.052/0.034

0.028/0.020

5685/3494

1400186

7.612

Bonito Local

0.902/0.926

0.016/0.014

0.052/0.034

0.030/0.024

5473/3124

1353165

7.073

Bonito Sup

0.930/0.966

0.013/0.007

0.034/0.013

0.023/0.013

5660/3371

1459829

7.980

Guppy 5.0

0.907/0.935

0.020/0.015

0.043/0.027

0.030/0.021

5720/3480

1403826

7.631

  1. *First five entries are listed as ‘mean/median’
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BMC Bioinformatics

ISSN: 1471-2105

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