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Table 5 Testing performances on data batch 3

From: Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

 

Lokatt

Bonito Local

Bonito Sup

Species

Identity

Bases (\(10^6\))

Identity

Bases (\(10^6\))

Identity

Bases (\(10^6\))

A. pittii

0.897/0.914

105

0.873/0.899

101

0.936/0.957

109

H. haemolyticus

0.854/0.884

41

0.842/0.871

39

0.932/0.957

53

K. pneumonia(INF032)

0.887/0.900

506

0.845/0.873

480

0.925/0.938

526

K. pneumonia(INF042)

0.874/0.897

487

0.814/0.847

448

0.916/0.937

515

K. pneumonia(KSB2_1B)

0.874/0.895

356

0.827/0.860

324

0.912/0.935

378

K. pneumoniae(NUH29)

0.879/0.901

217

0.846/0.883

201

0.914/0.939

225

Ser. marcescens

0.894/0.910

118

0.877/0.898

113

0.933/0.952

123

Shi. sonnei

0.887/0.907

434

0.841/0.876

397

0.923/0.944

453

Sta. aureus

0.924/0.935

228

0.900/0.921

221

0.961/0.973

236

Ste. maltophilia

0.882/0.899

450

0.836/0.870

419

0.919/0.938

466

  1. *Identity scores are listed as ‘mean/median’