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Table 6 Testing performances on homopolymers

From: Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

 

Lokatt

Bonito Local

Bonito Sup

Species

Correct/total(\(10^6\))

Accuracy

Correct/total(\(10^6\))

Accuracy

Correct/total(\(10^6\))

Accuracy

Ecoli

621.7/824.8

0.754

598.5/768.3

0.779

729.8/844.1

0.865

A. pittii

6.0/7.8

0.768

5.3/6.9

0.766

6.2/7.1

0.871

H. haemolyticus

2.4/3.3

0.734

2.2/3.0

0.748

3.2/3.6

0.882

K. pneumonia (INF032)

21.9/30.9

0.711

17.3/24.9

0.694

21.0/25.6

0.823

K. pneumonia (INF042)

22.3/32.0

0.698

16.2/23.7

0.685

20.4/25.2

0.810

K. pneumonia (KSB2_1B)

13.2/19.0

0.691

11.7/17.1

0.683

14.9/18.6

0.803

K. pneumoniae (NUH29)

9.4/13.3

0.710

7.4/10.4

0.710

8.9/11.0

0.804

Ser. marcescens

4.0/5.5

0.732

3.8/5.1

0.738

4.4/5.3

0.832

Shi. sonnei

19.0/26.5

0.718

15.0/21.8

0.690

19.2/23.2

0.829

Sta. aureus

15.7/19.4

0.812

12.2/15.1

0.803

14.1/15.3

0.921

Ste. maltophilia

11.0/15.6

0.705

10.3/15.0

0.683

12.5/15.6

0.796

summarize

746.8/998.0

0.748

699.8/911.4

0.768

854.5/994.4

0.859