Table 7 Sequence-based results based on the macro-F1 score on the test set using the balanced sample strategy. The bold values show the best results
From: Machine learning-based approaches for ubiquitination site prediction in human proteins
Window size | BERT-small |
|---|---|
5 | 0.548 ± 0.009 |
7 | 0.523 ± 0.01 |
9 | 0.533 ± 0.001 |
15 | 0.541 ± 0.0 |
21 | 0.552 ± 0.002 |
27 | 0.565 ± 0.002 |
33 | 0.571 ± 0.003 |
45 | 0.570 ± 0.006 |
55 | 0.571 ± 0.002 |
77 | 0.571 ± 0.004 |
99 | 0.569 ± 0.005 |
Avg (5–99) | 0.555 ± 0.005 |
Avg (7–99) | 0.556 ± 0.006 |