Skip to main content
Fig. 5 | BMC Bioinformatics

Fig. 5

From: Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data

Fig. 5

Calculated properties/features, biophysical and beyond. For each protein domain in Prop3D-20sf, we annotate every atom with the following features: atom type, element type, residue type, partial charge & electrostatics, concavity, hydrophobicity, accessible surface area, secondary structure type, and evolutionary conservation. For a full list of features used in Prop3D-20sf, see the text and Tables 3 and 4. In the ribbon diagram shown here (PDB1KQ2), a featurized (atomic) region is highlighted and demarcated in red, atop a voxelized background. Note that any bespoke feature can be defined and applied in Prop3D

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us