Fig. 3
From: PhytoPipe: a phytosanitary pipeline for plant pathogen detection and diagnosis using RNA-seq data
Comparison between spike-in and observed pathogen reads from simulated RNA-seq data. A 79 viruses/viroids from 12 crops. Observed reads were obtained by either mapping reads to a viral reference if viral contigs are annotated or are from Kraken2 classification. The high correlation between the spike-in and observed viral reads shows high detection ability of PhytoPipe. B 28 bacteria/fungi/oomycetes in 12 crops. Observed reads were obtained from Kraken2 classification