Skip to main content

Table 5 Comparison of BioEGRE and baseline models on CHEMPROT

From: BioEGRE: a linguistic topology enhanced method for biomedical relation extraction based on BioELECTRA and graph pointer neural network

Methods

Precision (%)

Recall (%)

F1-score (%)

BERT + Guassian [26]

77.08

76.06

76.56

BERT + Capsule network [5]

77.78

71.86

74.70

NCBI-BERT [28]

74.5

70.6

72.5

PubMedBERT [24]

70.12

72.51

71.29

ClinicalBERT [25]

72.78

74.01

73.39

BioBERT [14]

77.02

75.90

76.46

BioELECTRA [15]

77.31

80.31

78.78

Proposed

77.97

82.07

79.97

  1. The bold indicates list the results of the models represents the best among the results