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Fig. 5 | BMC Bioinformatics

Fig. 5

From: PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins

Fig. 5

Example PEPMatch output from Next-Generation IEDB tools site. Using the peptide from the implementation description, searching up to 2 mismatches, this peptide maps to multiple proteins. The output includes the original sequence, the matched sequence, the UniProt protein ID, the protein name, the gene symbol, the number of mismatches, and the residue positions where those mismatches occur. The user has the option to also include the species or organism name for the proteome, the taxon ID for that organism, the start and end index positions within the protein that the peptide is found in, and the protein existence level, which is a value curated by UniProt providing the level of evidence which the protein exists

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