Table 1 Results from the MHC class I dataset
From: PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
Method | Proteome preprocessing time (s) | Query preprocessing time (s) | Searching time (s) | Total time (s) | Recall (%) |
|---|---|---|---|---|---|
PEPMatch | 39.6 | N/A | 0.08 | 39.7 | 100 |
NmerMatch | 53.7 | 0.006 | 12.3 | 66.0 | 100 |
BLAST | 1.27 | N/A | 11.3 | 12.6 | 98.3 |
DIAMOND | 0.25 | N/A | 5.01 | 5.26 | 1.5 |
MMseqs2 | 2.65 | N/A | 0.50 | 3.15 | 0.0 |
Horspool | N/A | N/A | 1,310 | 1,310 | 100 |
Boyer-Moore | N/A | N/A | 5,424 | 5,424 | 100 |
KMP | N/A | N/A | 3,807 | 3,807 | 100 |
Z | N/A | N/A | 6,782 | 6,782 | 100 |