Table 2 Results from the SARS-CoV-2 dataset
From: PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
Method | Proteome preprocessing time (s) | Query preprocessing time (s) | Searching time (s) | Total time (s) | Recall (%) |
|---|---|---|---|---|---|
PEPMatch | 34.1 | N/A | 32.6 | 66.7 | 100 |
NmerMatch | 214 | 0.003 | 21.3 | 235.9 | 100 |
BLAST | 0.51 | N/A | 115.9 | 116.4 | 73.3 |
DIAMOND | 0.15 | N/A | 3.45 | 3.60 | 6.4 |
MMseqs2 | 1.83 | N/A | 0.77 | 2.60 | 7.4 |