Table 3 Results from the neoepitopes dataset
From: PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
Method | Proteome preprocessing time (s) | Query preprocessing time (s) | Searching time (s) | Total time (s) | Recall (%) |
|---|---|---|---|---|---|
PEPMatch | 13.3 | N/A | 18.4 | 31.7 | 100 |
NmerMatch | 50.4 | 0.002 | 40.1 | 90.5 | 100 |
BLAST | 1.28 | N/A | 119.2 | 120.5 | 58.1 |
DIAMOND | 0.24 | N/A | 4.93 | 5.17 | 34.0 |
MMseqs2 | 2.28 | N/A | 0.59 | 2.87 | 24.6 |