Table 4 Results from the milk peptides dataset
From: PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
Method | Proteome preprocessing time (s) | Query preprocessing time (s) | Searching time (s) | Total time (s) | Recall (%) |
|---|---|---|---|---|---|
PEPMatch | 45.5 | N/A | 600.3 | 645.8 | 100 |
NmerMatch | 203.7 | 0.005 | 1,168 | 1,372 | 100 |
BLAST | 1.30 | N/A | 105.3 | 106.6 | 84.2 |
DIAMOND | 0.25 | N/A | 5.24 | 5.49 | 75.3 |
MMseqs2 | 2.25 | N/A | 0.48 | 2.73 | 75.6 |