Fig. 2
From: PAPerFly: Partial Assembly-based Peak Finder for ab initio binding site reconstruction
A: Boxplot of maximal affinity to the target TF per peak sequence for peak sequences identified by PAPerFly and by the standard analysis for mouse TFs with motifs available in JASPAR. B: Count comparison of k-mers in control and in treatment k-mer sets. The k-mers that are present in control but not in treatment are not included. Grey arrows highlight the experiments where PAPerFly achieved very low accuracy. These are the only ones that have higher control k-mer count interquartile range than treatment k-mer count interquartile range