Fig. 3
From: PAPerFly: Partial Assembly-based Peak Finder for ab initio binding site reconstruction
Effect of the k-mer size and abundance percentile on the program performance. Top: median edit distance between a replicated PAPerFly peak and matched ENCODE peak (indicated by a point). Vertical lines indicate the interquartile range of the distribution. Middle: heatmaps of portion of ENCODE peak to which a replicated PAPerFly peak is matched corresponding to every tested experiment. Bottom: histograms of the amount of ENCODE peaks mapped to a single PAPerFly peak, estimated from all replicates. Bar height corresponds to the mean fraction of unique peaks in the respective range. Black vertical line crossing the bar denotes the 90 % confidence interval